RCPA - SPIA Microbiology Subset of Organisms Reference Set

{
  "resourceType": "ValueSet",
  "id": "spia-microbiology-organisms-refset-3",
  "meta": {
  "versionId": "1",
  "lastUpdated": "2023-12-19T16:37:21.424+10:00",
  "profile": [ "http://hl7.org/fhir/StructureDefinition/shareablevalueset", "https://healthterminologies.gov.au/fhir/StructureDefinition/composed-value-set-4" ]
  },
  "text": {
  "status": "generated",
  "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h1>RCPA - SPIA Microbiology Subset of Organisms Reference Set</h1><p>Standard set of organism codes for use in reporting pathology results in Australia, based on the SPIA Microbiology Subset of Organisms Reference Set (v3.1).</p>\n</div>"
  },
  "url": "https://www.rcpa.edu.au/fhir/ValueSet/spia-microbiology-organisms-refset-3",
  "identifier": [ {
  "system": "urn:ietf:rfc:3986",
  "value": "urn:oid:1.2.36.1.2001.1004.300.100.1006"
  } ],
  "version": "3.0.1",
  "name": "spia-microbiology-organisms-refset",
  "title": "RCPA - SPIA Microbiology Subset of Organisms Reference Set",
  "status": "draft",
  "experimental": true,
  "date": "2019-11-30T00:00:00+10:00",
  "publisher": "Australian Digital Health Agency",
  "contact": [ {
  "telecom": [ {
    "system": "email",
    "value": "help@digitalhealth.gov.au"
  } ]
  } ],
  "description": "Standard set of organism codes for use in reporting pathology results in Australia, based on the SPIA Microbiology Subset of Organisms Reference Set (v3.1).",
  "jurisdiction": [ {
  "coding": [ {
    "system": "urn:iso:std:iso:3166",
    "code": "AU",
    "display": "Australia"
  } ]
  } ],
  "copyright": "Copyright © 2017 - 2020 RCPA. All rights reserved.\n\nThis material contains content from LOINC (http://loinc.org). LOINC is copyright 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc.\n\nThis material contains information which is protected by copyright. You may download, display, print and reproduce any material for your personal, non-commercial use or use within your organisation subject to the following terms and conditions:\n\n1. The material may not be copied, reproduced, communicated or displayed, in whole or in part, for profit or commercial gain.\n2. Any copy, reproduction or communication must include this RCPA copyright notice in full.\n3. No changes may be made to the wording of the Standards and Guidelines, terminology reference sets and information models including commentary, tables or diagrams. Excerpts from the Standards and Guidelines, terminology reference sets and information models may be used. References and acknowledgments must be maintained in any reproduction or copy in full or part of the material.\n\nApart from any use as permitted under the Copyright Act 1968 or as set out above, all other rights are reserved. Requests and inquiries concerning reproduction and rights should be addressed to RCPA, 207 Albion St, Surry Hills, NSW 2010, Australia.",
  "compose": {
  "include": [ {
    "system": "http://snomed.info/sct",
    "concept": [ {
    "code": "113714003",
    "display": "Abiotrophia defectiva"
    }, {
    "code": "115161005",
    "display": "Abiotrophia sp. (nutritionally variant Strep)"
    }, {
    "code": "79354006",
    "display": "Absidia corymbifera"
    }, {
    "code": "57145009",
    "display": "Absidia sp."
    }, {
    "code": "50875003",
    "display": "Acanthamoeba sp."
    }, {
    "code": "11950008",
    "display": "Acanthocephala sp."
    }, {
    "code": "396951004",
    "display": "Acetobacter liquefaciens"
    }, {
    "code": "396949003",
    "display": "Acetobacter sp."
    }, {
    "code": "89082003",
    "display": "Acholeplasma laidlawii"
    }, {
    "code": "84858009",
    "display": "Acholeplasma sp."
    }, {
    "code": "413414001",
    "display": "Achromobacter denitrificans",
    "designation": [ {
      "use": {
      "system": "http://snomed.info/sct",
      "code": "900000000000013009",
      "display": "Synonym"
      },
      "value": "Alcaligenes xylosoxidans subsp. denitrificans"
    } ]
    }, {
    "code": "413420000",
    "display": "Achromobacter piechaudii"
    }, {
    "code": "91620006",
    "display": "Achromobacter sp."
    }, {
    "code": "413424009",
    "display": "Achromobacter xylosoxidans"
    }, {
    "code": "432361001",
    "display": "Acidaminococcaceae"
    }, {
    "code": "63005002",
    "display": "Acidaminococcus fermentans"
    }, {
    "code": "28207003",
    "display": "Acidaminococcus sp."
    }, {
    "code": "243365003",
    "display": "Acid-fast bacillus"
    }, {
    "code": "113688001",
    "display": "Acidovorax konjaci"
    }, {
    "code": "115153000",
    "display": "Acidovorax sp."
    }, {
    "code": "7757008",
    "display": "Acinetobacter alcaligenes"
    }, {
    "code": "91288006",
    "display": "Acinetobacter baumannii"
    }, {
    "code": "113376007",
    "display": "Acinetobacter baumannii complex"
    }, {
    "code": "82550008",
    "display": "Acinetobacter calcoaceticus subsp. Anitratus"
    }, {
    "code": "77045006",
    "display": "Acinetobacter haemolyticus"
    }, {
    "code": "13879009",
    "display": "Acinetobacter junii"
    }, {
    "code": "83088009",
    "display": "Acinetobacter lwoffii"
    }, {
    "code": "423516002",
    "display": "Acinetobacter parvus"
    }, {
    "code": "113381003",
    "display": "Acinetobacter radioresistens"
    }, {
    "code": "424791004",
    "display": "Acinetobacter ursingii"
    }, {
    "code": "36128004",
    "display": "Acremonium potronii"
    }, {
    "code": "63996006",
    "display": "Acremonium sp."
    }, {
    "code": "41028004",
    "display": "Actinobacillus actinoides"
    }, {
    "code": "6695002",
    "display": "Actinobacillus capsulatus"
    }, {
    "code": "27165004",
    "display": "Actinobacillus equuli"
    }, {
    "code": "43638004",
    "display": "Actinobacillus hominis"
    }, {
    "code": "78043002",
    "display": "Actinobacillus lignieresii"
    }, {
    "code": "85851009",
    "display": "Actinobacillus sp."
    }, {
    "code": "112272003",
    "display": "Actinobacillus suis"
    }, {
    "code": "1839009",
    "display": "Actinobacillus ureae"
    }, {
    "code": "416353004",
    "display": "Actinobaculum massiliae"
    }, {
    "code": "114043007",
    "display": "Actinobaculum sp."
    }, {
    "code": "427148009",
    "display": "Actinobaculum urinale"
    }, {
    "code": "90285002",
    "display": "Actinomadura madura"
    }, {
    "code": "65202006",
    "display": "Actinomadura pelletieri"
    }, {
    "code": "41571004",
    "display": "Actinomadura sp."
    }, {
    "code": "59806008",
    "display": "Actinomyces bovis"
    }, {
    "code": "427237005",
    "display": "Actinomyces cardiffensis"
    }, {
    "code": "5844005",
    "display": "Actinomyces denticolens"
    }, {
    "code": "113414004",
    "display": "Actinomyces europaeus"
    }, {
    "code": "419012004",
    "display": "Actinomyces funkei"
    }, {
    "code": "113415003",
    "display": "Actinomyces georgiae"
    }, {
    "code": "113416002",
    "display": "Actinomyces gerencseriae"
    }, {
    "code": "427269001",
    "display": "Actinomyces hongkongensis"
    }, {
    "code": "46369004",
    "display": "Actinomyces israelii"
    }, {
    "code": "3174002",
    "display": "Actinomyces meyeri"
    }, {
    "code": "8940004",
    "display": "Actinomyces naeslundii"
    }, {
    "code": "425520001",
    "display": "Actinomyces nasicola"
    }, {
    "code": "113419009",
    "display": "Actinomyces neuii subsp anitratus"
    }, {
    "code": "113420003",
    "display": "Actinomyces neuii subsp neuii"
    }, {
    "code": "12069003",
    "display": "Actinomyces odontolyticus"
    }, {
    "code": "425488009",
    "display": "Actinomyces oricola"
    }, {
    "code": "427691003",
    "display": "Actinomyces radicidentis"
    }, {
    "code": "113421004",
    "display": "Actinomyces radingae"
    }, {
    "code": "46954006",
    "display": "Actinomyces slackii"
    }, {
    "code": "40560008",
    "display": "Actinomyces sp."
    }, {
    "code": "114045000",
    "display": "Actinomyces suis"
    }, {
    "code": "113422006",
    "display": "Actinomyces turicensis"
    }, {
    "code": "409827009",
    "display": "Actinomyces urogenitalis"
    }, {
    "code": "33529006",
    "display": "Actinomyces viscosis"
    }, {
    "code": "409824002",
    "display": "Actinomycetaceae"
    }, {
    "code": "114256005",
    "display": "Actinomycete unidentified aerobe"
    }, {
    "code": "424470006",
    "display": "Adenoviridae"
    }, {
    "code": "74871001",
    "display": "Adenovirus"
    }, {
    "code": "68883008",
    "display": "Adenovirus 40"
    }, {
    "code": "29576004",
    "display": "Adenovirus 41"
    }, {
    "code": "409818008",
    "display": "Aerococcus christensenii"
    }, {
    "code": "131205009",
    "display": "Aerococcus sanguicola"
    }, {
    "code": "427222006",
    "display": "Aerococcus sanguinicola"
    }, {
    "code": "9008009",
    "display": "Aerococcus sp."
    }, {
    "code": "243230001",
    "display": "Aerococcus urinae"
    }, {
    "code": "409819000",
    "display": "Aerococcus urinaehomi ...