RCPA - SPIA Microbiology Serology Molecular Pathology Terminology Reference Set

{
  "resourceType": "ValueSet",
  "id": "spia-microbiology-serology-molecular-refset-3",
  "meta": {
  "versionId": "1",
  "lastUpdated": "2023-12-19T16:37:21.242+10:00",
  "profile": [ "http://hl7.org/fhir/StructureDefinition/shareablevalueset", "https://healthterminologies.gov.au/fhir/StructureDefinition/composed-value-set-4" ]
  },
  "text": {
  "status": "generated",
  "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h1>RCPA - SPIA Microbiology Serology Molecular Pathology Terminology Reference Set</h1><p>Standard codes for use in reporting microbiology pathology results in Australia, based on the SPIA Microbiology Serology Molecular Pathology Reference Set (v3.1).</p>\n</div>"
  },
  "url": "https://www.rcpa.edu.au/fhir/ValueSet/spia-microbiology-serology-molecular-refset-3",
  "identifier": [ {
  "system": "urn:ietf:rfc:3986",
  "value": "urn:oid:1.2.36.1.2001.1004.300.100.1004"
  } ],
  "version": "3.0.1",
  "name": "spia-microbiology-serology-molecular-refset",
  "title": "RCPA - SPIA Microbiology Serology Molecular Pathology Terminology Reference Set",
  "status": "draft",
  "experimental": true,
  "date": "2019-11-30T00:00:00+10:00",
  "publisher": "Australian Digital Health Agency",
  "contact": [ {
  "telecom": [ {
    "system": "email",
    "value": "help@digitalhealth.gov.au"
  } ]
  } ],
  "description": "Standard codes for use in reporting microbiology pathology results in Australia, based on the SPIA Microbiology Serology Molecular Pathology Reference Set (v3.1).",
  "jurisdiction": [ {
  "coding": [ {
    "system": "urn:iso:std:iso:3166",
    "code": "AU",
    "display": "Australia"
  } ]
  } ],
  "copyright": "Copyright © 2017 - 2020 RCPA. All rights reserved.\n\nThis material contains content from LOINC (http://loinc.org). LOINC is copyright 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc.\n\nThis material contains information which is protected by copyright. You may download, display, print and reproduce any material for your personal, non-commercial use or use within your organisation subject to the following terms and conditions:\n\n1. The material may not be copied, reproduced, communicated or displayed, in whole or in part, for profit or commercial gain.\n2. Any copy, reproduction or communication must include this RCPA copyright notice in full.\n3. No changes may be made to the wording of the Standards and Guidelines, terminology reference sets and information models including commentary, tables or diagrams. Excerpts from the Standards and Guidelines, terminology reference sets and information models may be used. References and acknowledgments must be maintained in any reproduction or copy in full or part of the material.\n\nApart from any use as permitted under the Copyright Act 1968 or as set out above, all other rights are reserved. Requests and inquiries concerning reproduction and rights should be addressed to RCPA, 207 Albion St, Surry Hills, NSW 2010, Australia.",
  "compose": {
  "include": [ {
    "system": "http://loinc.org",
    "concept": [ {
    "code": "41429-2",
    "display": "Acanthamoeba sp DNA"
    }, {
    "code": "31711-5",
    "display": "Adenovirus Ag faeces"
    }, {
    "code": "40975-5",
    "display": "Adenovirus DNA"
    }, {
    "code": "51663-3",
    "display": "Alphavirus RNA"
    }, {
    "code": "41621-4",
    "display": "Arenavirus RNA"
    }, {
    "code": "49863-4",
    "display": "Aspergillus sp DNA"
    }, {
    "code": "69938-9",
    "display": "Astrovirus RNA"
    }, {
    "code": "41623-0",
    "display": "Bacillus anthracis DNA"
    }, {
    "code": "41622-2",
    "display": "Bacillus anthracis DNA"
    }, {
    "code": "66885-5",
    "display": "Bacterial 16S rRNA"
    }, {
    "code": "31247-0",
    "display": "Barmah Forest virus IgG",
    "designation": [ {
      "use": {
      "system": "http://snomed.info/sct",
      "code": "900000000000013009",
      "display": "Synonym"
      },
      "value": "BFV IgG"
    } ]
    }, {
    "code": "31248-8",
    "display": "Barmah Forest virus IgM",
    "designation": [ {
      "use": {
      "system": "http://snomed.info/sct",
      "code": "900000000000013009",
      "display": "Synonym"
      },
      "value": "BFV IgM"
    } ]
    }, {
    "code": "81688-4",
    "display": "Barmah Forest virus RNA"
    }, {
    "code": "81120-8",
    "display": "Barmah Forest virus total Ab"
    }, {
    "code": "33986-1",
    "display": "Bartonella henselae DNA"
    }, {
    "code": "57910-2",
    "display": "Bartonella quintana DNA"
    }, {
    "code": "42587-6",
    "display": "BK virus DNA"
    }, {
    "code": "43201-3",
    "display": "BK virus DNA"
    }, {
    "code": "48309-9",
    "display": "BK virus DNA"
    }, {
    "code": "47251-4",
    "display": "BK virus DNA"
    }, {
    "code": "23826-1",
    "display": "Bordetella pertussis DNA"
    }, {
    "code": "29672-3",
    "display": "Bordetella pertussis IgA"
    }, {
    "code": "29674-9",
    "display": "Bordetella pertussis IgG"
    }, {
    "code": "9363-3",
    "display": "Bordetella pertussis IgG"
    }, {
    "code": "29673-1",
    "display": "Bordetella pertussis IgM"
    }, {
    "code": "23830-3",
    "display": "Bordetella pertussis toxin IgA"
    }, {
    "code": "23831-1",
    "display": "Bordetella pertussis toxin IgG"
    }, {
    "code": "23832-9",
    "display": "Bordetella pertussis toxin IgM"
    }, {
    "code": "4991-6",
    "display": "Borrelia burgdorferi DNA"
    }, {
    "code": "22128-3",
    "display": "Borrelia burgdorferi IgG"
    }, {
    "code": "22135-8",
    "display": "Borrelia burgdorferi IgM"
    }, {
    "code": "6325-5",
    "display": "Brucella Ab"
    }, {
    "code": "19053-8",
    "display": "Brucella sp Ab"
    }, {
    "code": "41626-3",
    "display": "Brucella sp DNA"
    }, {
    "code": "24396-4",
    "display": "Brucella sp IgG"
    }, {
    "code": "24397-2",
    "display": "Brucella sp IgM"
    }, {
    "code": "22956-7",
    "display": "Burkholderia mallei Ab"
    }, {
    "code": "70853-7",
    "display": "Burkholderia mallei DNA"
    }, {
    "code": "70852-9",
    "display": "Burkholderia pseudomallei DNA"
    }, {
    "code": "23965-7",
    "display": "Burkholderia pseudomallei IgG"
    }, {
    "code": "23973-1",
    "display": "Burkholderia pseudomallei IgM"
    }, {
    "code": "61368-7",
    "display": "Campylobacter jejuni DNA"
    }, {
    "code": "51664-1",
    "display": "Chikungunya virus RNA",
    "designation": [ {
      "use": {
      "system": "http://snomed.info/sct",
      "code": "900000000000013009",
      "display": "Synonym"
      },
      "value": "CHIKV RNA"
    } ]
    }, {
    "code": "43064-5",
    "display": "Chikungunya virus Ab",
    "designation": [ {
      "use": {
      "system": "http://snomed.info/sct",
      "code": "900000000000013009",
      "display": "Synonym"
      },
      "value": "CHIKV Ab"
    } ]
    }, {
    "code": "29677-2",
    "display": "Chlamydia sp IgA"
    }, {
    "code": "21185-4",
    "display": "Chlamydia sp IgG"
    }, {
    "code": "21186-2",
    "display": "Chlamydia sp IgM"
    }, {
    "code": "45012-2",
    "display": "Chlamydia sp total Ab"
    }, {
    "code": "21613-5",
    "display": "Chlamydia trachomatis DNA"
    }, {
    "code": "45005-6",
    "display": "Chlamydia trachomatis IgA"
    }, {
    "code": "43848-1",
    "display": "Chlamydia trachomatis IgG"
    }, {
    "code": "41157-9",
    "display": "Chlamydia trachomatis IgM"
    }, {
    "code": "47211-8",
    "display": "Chlamydia trachomatis L2 DNA",
    "designation": [ {
      "use": {
      "system": "http://snomed.info/sct",
      "code": "900000000000013009",
      "display": "Synonym"
      },
      "value": "Lymphogranuloma venerum"
    } ]
    }, {
    "code": "22187-9",
    "display": "Chlamydia trachomatis total Ab"
    }, {
    "code": "30204-2",
    "display": "Chlamydia trachomatis total Ab"
    }, {
    "code": "6355-2",
    "display": "Chlamydia trachomatis total Ab"
    }, {
    "code": "31778-4",
    "display": "Chlamydophila pneumoniae Ag",
    "designation": [ {
      "use": {
      "system": "http://snomed.info/sct",
      "code": "900000000000013009",
      "display": "Synonym"
      },
      "value": "Chlamydia pneumoniae antigen"
    } ]
    }, {
    "code": "34645-2",
    "display": "Chlamydophila pneumoniae DNA",
    "designation": [ {
      "use": {
      "system": "http://snomed.info/sct",
      "code": "900000000000013009",
      "display": "Synonym"
      },
      "value": "Chlamydia pneumoniae DNA"
    } ]
    }, {
    "code": "44982-7",
    "display": "Chlamydophila pneumoniae IgA",
    "designation": [ {
      "use": {
      "system": "http://snomed.info/sct",
      "code": "900000000000013009",
      "display": "Synonym"
      },
      "value": "Chlamydia pneumoniae IgA"
    } ]
    }, {
    "code": "22170-5",
    "display": "Chlamydophila pneumoniae IgA",
    "designation": [ {
      "use": {
      "system": "http://snomed.info/sct",
      "code": "900000000000013009",
      "display": "Synonym"
      }, ...